visual molecular dynamics software (Molecular Dynamics Inc)
86
Structured Review
Molecular Dynamics Inc
visual molecular dynamics software
Visual Molecular Dynamics Software, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/molecular+visualization+software/dynamics+molecular+visual/pm42234756-206-14-15
Average 86 stars, based on 1 article reviews
Visual Molecular Dynamics Software, supplied by Molecular Dynamics Inc, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/molecular+visualization+software/dynamics+molecular+visual/pm42234756-206-14-15
Average 86 stars, based on 1 article reviews
visual molecular dynamics software - by Bioz Stars,
2026-09
86/100 stars
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Software:Article Title: Dissolution mechanism enabling efficient lignin and hemicellulose separation in CrCl3-catalyzed ethanol pretreatment Article Snippet: As a green and efficient pretreatment method, CrCl3-catalyzed ethanol pretreatment was employed to depolymerize poplar at various reaction times (5, 10, 20, 30, 50, and 70 min) and temperatures (160, 170, 180, 190, and 200C) to effectively remove lignin and hemicellulose, thus improving the subsequent enzymatic saccharification efficiency of cellulose.. The maximum lignin and hemicellulose removal yields of 94.51 % and 94.78 %, respectively, were achieved when pretreated at 200C for 20 min.. Furthermore, The CrCl3-ethanol pretreatment was found to have low dissolution activation energies (18.03 kJ/mol for lignin and 24.15 kJ/mol for hemicellulose) through pseudo-first-order kinetic modeling with ’potential solubility’ integration, demonstrating an energy-efficient synergistic effect conducive to reaction progression. Article Title: Breaking new ground into RAD51–BRC repeats interplay in Homologous Recombination Article Snippet: .. Visualization of the MD trajectories was carried out with the Article Title: Nucleic acid - Guided biosensing to trace endosulfan via graphene oxide-assisted SELEX. Article Snippet: Aptamer-based biosensors (aptasensors) offer high specificity and sensitivity for detecting small molecules, but their broader use is limited by the lack of suitable aptamers.. Endosulfan (ES), a toxic organochlorine pesticide, currently lacks an aptamer for selective detection.. In this study, we employed graphene oxide (GO)-assisted SELEX to isolate a high-affinity aptamer for ES, leveraging GO's ability to enhance aptamer-target interactions. Article Title: ARNy Plotter: A Comprehensive Web Server for RNA Ensemble Structural Analysis and Visualization Article Snippet: .. For dynamic analysis, researchers usually rely on general other:Article Title: Predicting protein-nucleic acid flexibility using persistent sheaf Laplacians. Article Snippet: Understanding the flexibility of protein–nucleic acid complexes, often characterized by atomic B-factors, is essential for elucidating their structure, dynamics, and functions, such as reactivity and allosteric pathways.. Traditional models such as Gaussian network models (GNM) and elastic network models (ENM) often fall short in capturing multiscale interactions, especially in large or complex biomolecular systems.. In this work, we apply the Persistent Sheaf Laplacian (PSL) framework for the B-factor prediction of protein–nucleic acid complexes. Article Title: Deepening bis-(thio)carbohydrazones conformational dynamics and hydrogen bond interactions in a non-protic solvent: DFT, molecular dynamics, NMR, and Raman investigations. Article Snippet: Despite the capability of bis-(thio)carbohydrazones to coordinate metals and the remarkable biological properties of the resulting complexes, no general information is known about their individual behavior in solution.. This study is focused on two recently synthesized compounds, a bis-thiocarbohydrazone (bis-TCH) and a bis-carbohydrazone (bis-CH) isolated as sodium salts, that have shown chelating properties toward copper(II) and zinc(II) metal ions along with promising cytotoxic activity.. In this work, an integrated theoretical–computational, nuclear magnetic resonance (NMR), and vibrational characterization of both bis-TCH and bis-CH anions in a non-protic solvent (dimethylsulfoxide) is presented to better elucidate their properties. |